I know that my advice is no where as good as Lee's, but I'll put in my dime's worth (if you haven't noticed yet, I always carry more than 2 cents.

)
When I first bought my true percula clown and put him in...he did the same thing. Stayed up in the corner...day and night. During the day he would swim up and down the corner, but wouldn't come out of it. I thought for sure he was done for.
I really didn't see my two blue velvet damsels picking on him, but I thought maybe that was happening at night. He would stay (at night) up next to the powerhead and wouldn't come out.
In a matter of time (maybe a week or two), he finally came out and was happy swimming with everyone. He even eventualy made it to the rock work to sleep there at night instead up at the top corner next to the powerhead (dang, that had to be loud for him!

) It is kinda funny though because he will ONLY go to the other side of the tank if he's with one of the damsels. Follows them around like a puppy dog at times. hehehe...
Now he's happy as a clam. So, judging by what you are saying and especially since the rockwork (his/her home) is a little changed, he/she might be freakin' out a bit. I'll bet within a week or two everything will be okay.
PS If not...no one saw me write this post and I know nothing about it.
