Hi Joshua,
It's impossible to say what you have based on the information in your post. Remember that the appearance of cyanobacteria can vary tremendously, so it's possible that what you have is cyanobacteria. In general, the cyano that seems to pop up most frequently in reef aquaria is a dark reddish-brown in color and upon close inspection looks like soft hair-like strands that are matted together. It has a slimey appearance and doesn't look like red algae (Rhodophyta) at all when you inspect it very closely.
Is this "algae" only on some of the rocks or is any of it on the sand bed? How does it appear to spread? Look at the edges of the "algae patch" and see if you see anything that looks like runners spreading out across the surface of the live rock. Exactly how tall is this "algae" at its highest spot? Are we talking about 1/4" or 1/2" or what?
Regardless of whether it is cyanobacteria or some form of fast spreading red turf algae (Rhodophyta), you have a problem. Do not go any further with your new tank until you figure out how to deal with this potentially serious problem. It will be much easier to deal with it now than to wait until after you have introduced corals and other animals to your tank.
If you can't post a picture, then try your best to describe in detail what you're seeing in the tank. Does it appear to increase in volume after the lights come on in the morning? In other words, does it always seem like it's a little less in the morning than it was when you looked at it the previous afternoon but then within a couple of hours after the lights come on, it's back to where it was the afternoon before? That would be a clue that it's really cyanobacteria.



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