Hi Kim,
How high does your test kit measure Nitrates too?
I recommend you take a sample of your water to your LFS and ask them to test it. Explain what you saw and just ask if they can test because your not sure your kit's accurate.
You could also do a google search for the brand of kit and see if anyones had similar results.
My guess would be that your nitrates are off the chart high due to cycling and the bio balls.
Did you get a test kit for reefs with all that stuff? If your going to keep corals you should get one. In general it's good to have tests for Copper, Magnesium, Iodine, Calcium, KH and Phosphates. Possibly a few other things. Some, like copper, you won't use much.
The brown algae should dissappear in a few days. No worries.



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