You'll find by microscopic examination that it isn't an algae per se. They are microbial lifeforms.
You control their presence by NOT providing them a pleasant existence. So, what don't they like?
1. Circulation. A proper circulation of water prevents them from taking any kind of foothold. Rearrange water circulation; increase circulation; avoid dead spot.
2. Disturbance. These microbes like to be left alone, undisturbed. So. . .disturb them!The substrate should be cleaned periodically. I suggest cleaning it every 4 to 6 weeks. If you've never done this before, don't do the entire substrate at one time -- start by cleaning a third of it every other week, then clean the whole substrate area on the 8th week, then every 4 to 6 weeks thereafter. In addition you can employ biological 'disturbers.' Bottom dwellers that stir the substrate works well. These include some snails, bristle worms, and some substrate sifters (fishes and invertebrates). With large systems, a benign cucumber is a good addition.
3. Food. They not only care about lighting, but organics in the water. You really can't regulate them effectively by adjusting your lighting. Nature has made it a point to allow its own to adjust to various light levels. But what these guys need too are dissolved organics. A system with a properly sized and maintained skimmer and carbon treatment makes it harder for these guys to get a foothold. Also effective is to reduce the systems bioload, clean up/maintain substrate more often, rinse foods, use foods that are totally consumed (avoiding pellets and flakes that contain products fish don't digest but just add to tank pollution), rinse foods of liquids which aren't consumed, and remove uneaten foods promptly.
4. Water quality. Besides the things above that influence water quality, start reading up on properly balancing the system. Get additional information about this from this post: What is Water Quality. Look to your source water purity and other sources of undesirable components to your tank.
5. Maintenance. Besides the maintenance on the substrate, skimmer, and carbon filtration, you've got to move landscaping around and get settled 'detritus' that begins to hang around. This is more important as your system ages.
6. Lighting. Vary it, but keep in mind that it really doesn't have that great of a deterrence to these microbes.
Hope the above helps.



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The substrate should be cleaned periodically. I suggest cleaning it every 4 to 6 weeks. If you've never done this before, don't do the entire substrate at one time -- start by cleaning a third of it every other week, then clean the whole substrate area on the 8th week, then every 4 to 6 weeks thereafter. In addition you can employ biological 'disturbers.' Bottom dwellers that stir the substrate works well. These include some snails, bristle worms, and some substrate sifters (fishes and invertebrates). With large systems, a benign cucumber is a good addition.
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