Carbon should be to filter the air coming out - it is used when an ozonizer is connected to the protein skimmer. It is unnecessary if you aren't using an ozonizer. No filter is necessary on a protein skimmer.
Foam should be going up the tube into the top compartment (not water).
Do you have a clue what brand it is? You may be able to find an owner's manual or some kind person that can help you adjust it if we knew what brand.... if you don't know the brand, can you post a pic?



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Should there be a filter somewhere in there?
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